# -*- coding: utf-8 -*-
# This software is open source software available under the BSD-3 license.
#
# Copyright (c) 2020 Triad National Security, LLC. All rights reserved.
# Copyright (c) 2020 Lawrence Livermore National Security, LLC. All rights
# reserved.
# Copyright (c) 2020 UT-Battelle, LLC. All rights reserved.
#
# Additional copyright and license information can be found in the LICENSE file
# distributed with this code, or at
# https://raw.githubusercontent.com/MPAS-Dev/MPAS-Analysis/master/LICENSE
#
from __future__ import absolute_import, division, print_function, \
unicode_literals
import xarray as xr
import numpy
import matplotlib.pyplot as plt
from mpas_tools.cime.constants import constants as cime_constants
from mpas_analysis.shared import AnalysisTask
from mpas_analysis.ocean.compute_anomaly_subtask import ComputeAnomalySubtask
from mpas_analysis.ocean.plot_hovmoller_subtask import PlotHovmollerSubtask
from mpas_analysis.ocean.plot_depth_integrated_time_series_subtask import \
PlotDepthIntegratedTimeSeriesSubtask
from mpas_analysis.shared.constants import constants as mpas_constants
[docs]class TimeSeriesOHCAnomaly(AnalysisTask):
"""
Performs analysis of ocean heat content (OHC) from time-series output.
"""
# Authors
# -------
# Xylar Asay-Davis, Milena Veneziani, Greg Streletz
[docs] def __init__(self, config, mpasTimeSeriesTask, controlConfig=None):
# {{{
"""
Construct the analysis task.
Parameters
----------
config : ``MpasAnalysisConfigParser``
Configuration options
mpasTimeSeriesTask : ``MpasTimeSeriesTask``
The task that extracts the time series from MPAS monthly output
controlConfig : ``MpasAnalysisConfigParser``, optional
Configuration options for a control run (if any)
"""
# Authors
# -------
# Xylar Asay-Davis
# first, call the constructor from the base class (AnalysisTask)
super(TimeSeriesOHCAnomaly, self).__init__(
config=config,
taskName='timeSeriesOHCAnomaly',
componentName='ocean',
tags=['timeSeries', 'ohc', 'publicObs', 'anomaly'])
sectionName = 'timeSeriesOHCAnomaly'
regionNames = config.getExpression(sectionName, 'regions')
movingAveragePoints = config.getint(sectionName, 'movingAveragePoints')
self.variableDict = {}
for suffix in ['avgLayerTemperature', 'sumLayerMaskValue',
'avgLayerArea', 'avgLayerThickness']:
key = 'timeMonthly_avg_avgValueWithinOceanLayerRegion_' + suffix
self.variableDict[key] = suffix
mpasFieldName = 'ohc'
timeSeriesFileName = 'regionAveragedOHCAnomaly.nc'
anomalyTask = ComputeAnomalySubtask(
parentTask=self,
mpasTimeSeriesTask=mpasTimeSeriesTask,
outFileName=timeSeriesFileName,
variableList=list(self.variableDict.keys()),
movingAveragePoints=movingAveragePoints,
alter_dataset=self._compute_ohc)
self.add_subtask(anomalyTask)
for regionName in regionNames:
caption = 'Trend of {} OHC Anomaly vs depth'.format(
regionName)
plotTask = PlotHovmollerSubtask(
parentTask=self,
regionName=regionName,
inFileName=timeSeriesFileName,
outFileLabel='ohcAnomalyZ',
fieldNameInTitle='OHC Anomaly',
mpasFieldName=mpasFieldName,
unitsLabel=r'[$\times 10^{22}$ J]',
sectionName='hovmollerOHCAnomaly',
thumbnailSuffix=u'ΔOHC',
imageCaption=caption,
galleryGroup='Trends vs Depth',
groupSubtitle=None,
groupLink='trendsvsdepth',
galleryName=None)
plotTask.run_after(anomalyTask)
self.add_subtask(plotTask)
caption = 'Running Mean of the Anomaly in {} Ocean Heat ' \
'Content'.format(regionName)
plotTask = PlotOHCAnomaly(
parentTask=self,
regionName=regionName,
inFileName=timeSeriesFileName,
outFileLabel='ohcAnomaly',
fieldNameInTitle='OHC Anomaly',
mpasFieldName=mpasFieldName,
yAxisLabel=r'$\Delta$OHC [$\times 10^{22}$ J]',
sectionName='timeSeriesOHCAnomaly',
thumbnailSuffix=u'ΔOHC',
imageCaption=caption,
galleryGroup='Time Series',
groupSubtitle=None,
groupLink='timeseries',
galleryName=None,
controlConfig=controlConfig)
plotTask.run_after(anomalyTask)
self.add_subtask(plotTask)
# }}}
def _compute_ohc(self, ds): # {{{
'''
Compute the OHC time series.
'''
# regionNames = self.config.getExpression('regions', 'regions')
# ds['regionNames'] = ('nOceanRegionsTmp', regionNames)
# for convenience, rename the variables to simpler, shorter names
ds = ds.rename(self.variableDict)
# specific heat [J/(kg*degC)]
cp = self.namelist.getfloat('config_specific_heat_sea_water')
# [kg/m3]
rho = self.namelist.getfloat('config_density0')
unitsScalefactor = 1e-22
ds['ohc'] = unitsScalefactor * rho * cp * ds['sumLayerMaskValue'] * \
ds['avgLayerArea'] * ds['avgLayerThickness'] * \
ds['avgLayerTemperature']
ds.ohc.attrs['units'] = '$10^{22}$ J'
ds.ohc.attrs['description'] = 'Ocean heat content in each region'
# Note: restart file, not a mesh file because we need refBottomDepth,
# not in a mesh file
try:
restartFile = self.runStreams.readpath('restart')[0]
except ValueError:
raise IOError('No MPAS-O restart file found: need at least one '
'restart file for OHC calculation')
# Define/read in general variables
with xr.open_dataset(restartFile) as dsRestart:
# reference depth [m]
# add depths as a coordinate to the data set
ds.coords['depth'] = (('nVertLevels',),
dsRestart.refBottomDepth.values)
return ds # }}}
# }}}
class PlotOHCAnomaly(PlotDepthIntegratedTimeSeriesSubtask):
def customize_fig(self, fig):
"""
A function to override to customize the figure.
fig : matplotlib.pyplot.Figure
The figure
"""
def joules_to_watts_m2(joules):
watts_m2 = joules/factor
return watts_m2
def watts_m2_to_joules(watts_m2):
joules = factor*watts_m2
return joules
# add an axis on the right-hand side
color = 'tab:blue'
ax = plt.gca()
xlim = ax.get_xlim()
earth_surface_area = (4. * numpy.pi *
cime_constants['SHR_CONST_REARTH']**2)
max_time = xlim[-1]*mpas_constants.sec_per_day
factor = earth_surface_area*max_time/10**22
secaxy = ax.secondary_yaxis(
'right', functions=(joules_to_watts_m2, watts_m2_to_joules))
secaxy.set_ylabel(r'W/m$^2$', color=color)
secaxy.tick_params(axis='y', colors=color)
ax.spines['right'].set_color(color)
plt.draw()
yticks = secaxy.get_yticks()
for ytick in yticks:
plt.plot(xlim, [0, watts_m2_to_joules(ytick)], color=color,
linewidth=0.5)
# vim: foldmethod=marker ai ts=4 sts=4 et sw=4 ft=python